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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13188-RA through 18771 annotations produced 1 hits


Annotation Number : CG13188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033668
Gbrowse : chr2R:7826988-7853706 (+) // 100.0 //
Probeset : 1623093_at
Accessions : protein= NP_610714; /// NP_725091;, nucleotide= NM_136870; /// NM_165853;
Pathway : DNA-dependent // inferred from electronic annotation"
Interpro : 0005622 // intracellular // inferred from electronic annotation
FlyMine data for FBgn0033668.
BDGP gene expression has embryonic in situ data for CG13188: 19 pix of staining in 6 body parts.
BioGrid reports that CG13188 interacts with Dmel CG14425 .
TRiP has 1 RNAi stocks for FBgn0033668 available for purchase.
VDRC has 3 RNAi stocks for FBgn0033668 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 2.20None
Head2 10 of 4 4.40None
Eye1 10 of 4 4.05None
Thoracicoabdominal ganglion0 00 of 4 1.40None
Salivary gland4 20 of 4 9.16None
Crop2 10 of 4 5.30None
Midgut3 10 of 4 6.70None
Tubule1 00 of 4 2.80Up
Hindgut1 00 of 4 2.50None
Heart1 00 of 4 2.95None
Fat body1 00 of 4 3.16Up
Ovary0 00 of 4 1.00None
Testis0 00 of 4 0.80None
Male accessory glands1 00 of 4 2.80None
Virgin spermatheca2 10 of 4 5.47None
Mated spermatheca1 00 of 4 3.16Up
Adult carcass3 10 of 4 6.30None
Larval CNS1 00 of 4 2.11None
Larval Salivary gland2 00 of 4 5.21Up
Larval midgut1 00 of 4 2.84Up
Larval tubule0 00 of 4 1.50None
Larval hindgut3 00 of 4 7.37Up
Larval fat body5 10 of 412.00Up
Larval trachea4 10 of 4 8.42Up
Larval carcass2 10 of 4 5.11None
S2 cells (growing)1 00 of 4 3.79None
Whole fly0 00 of 4

Looking for CG13188-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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