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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13189-RA through 18771 annotations produced 1 hits



(CG13189):

Annotation Number : CG13189
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033665
Gbrowse : chr2R:7787023-7788904 (+) // 100.0 //
Probeset : 1638312_at
Accessions : protein= NP_610712;, nucleotide= NM_136868;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0046873 // metal ion transmembrane transporter activity // inferred from electronic annotation
FlyMine data for FBgn0033665.
BDGP gene expression has embryonic in situ data for CG13189: 11 pix of staining in 4 body parts.
VDRC has 1 RNAi stocks for FBgn0033665 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 ± 14 of 4 0.40Down
Head106 ± 54 of 4 1.10None
Eye81 ± 64 of 4 0.82None
Thoracicoabdominal ganglion52 ± 44 of 4 0.50Down
Salivary gland292 ± 104 of 4 2.95Up
Crop80 ± 54 of 4 0.80None
Midgut338 ± 24 of 4 3.40Up
Tubule1835 ± 3644 of 418.50Up
Hindgut108 ± 54 of 4 1.10None
Heart106 ± 14 of 4 1.08None
Fat body68 ± 64 of 4 0.69Down
Ovary83 ± 24 of 4 0.80None
Testis40 ± 34 of 4 0.40Down
Male accessory glands266 ± 34 of 4 2.70Up
Virgin spermatheca162 ± 24 of 4 1.64Up
Mated spermatheca211 ± 244 of 4 2.13Up
Adult carcass119 ± 34 of 4 1.20Up
Larval CNS41 ± 44 of 4 0.42Down
Larval Salivary gland71 ± 54 of 4 0.72Down
Larval midgut119 ± 114 of 4 1.20None
Larval tubule565 ± 284 of 4 5.70Up
Larval hindgut148 ± 114 of 4 1.50Up
Larval fat body89 ± 124 of 4 0.90None
Larval trachea54 ± 24 of 4 0.55Down
Larval carcass51 ± 14 of 4 0.52Down
S2 cells (growing)100 ± 24 of 4 1.01None
Whole fly99 ± 64 of 4

Looking for CG13189-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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