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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1319-RA through 18771 annotations produced 1 hits



(CG1319):

Annotation Number : CG1319
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035529
Gbrowse : chr3L:4292496-4293432 (+) // 100.0 //
Probeset : 1641058_at
Accessions : protein= NP_647889;, nucleotide= NM_139632;
Pathway : 0005759 // mitochondrial matrix // inferred from sequence or structural similarity
Interpro : "0005515 // protein binding // inferred from physical interaction /// 0009055 // electron carrier activity // inferred f
FlyMine data for FBgn0035529.
BDGP gene expression has embryonic in situ data for CG1319: 15 pix of staining in 10 body parts.
BioGrid reports that CG1319 interacts with CG4326 .
VDRC has 3 RNAi stocks for FBgn0035529 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain194 24 of 4 0.70Down
Head210 64 of 4 0.80Down
Eye111 124 of 4 0.42Down
Thoracicoabdominal ganglion226 64 of 4 0.90Down
Salivary gland231 144 of 4 0.87None
Crop264 104 of 4 1.00None
Midgut436 154 of 4 1.60Up
Tubule767 224 of 4 2.90Up
Hindgut345 114 of 4 1.30Up
Heart260 74 of 4 0.98None
Fat body237 214 of 4 0.89None
Ovary430 14 of 4 1.60Up
Testis205 144 of 4 0.80Down
Male accessory glands101 34 of 4 0.40Down
Virgin spermatheca258 124 of 4 0.97None
Mated spermatheca188 84 of 4 0.71Down
Adult carcass280 44 of 4 1.10Up
Larval CNS100 104 of 4 0.38Down
Larval Salivary gland182 124 of 4 0.69Down
Larval midgut217 174 of 4 0.82None
Larval tubule358 244 of 4 1.30Up
Larval hindgut226 104 of 4 0.85Down
Larval fat body102 74 of 4 0.40Down
Larval trachea175 194 of 4 0.66Down
Larval carcass170 104 of 4 0.64Down
S2 cells (growing)114 34 of 4 0.43Down
Whole fly266 14 of 4

Looking for CG1319-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime