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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13192-RA through 18771 annotations produced 1 hits



(CG13192):

Annotation Number : CG13192
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033653
Gbrowse : chr2R:7712920-7714302 (+) // 100.0 //
Probeset : 1637615_at
Accessions : protein= NP_610702;, nucleotide= NM_136858;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0033653.
BioGrid reports that CG13192 interacts with CG5737 CG33141 .
TRiP has 1 RNAi stocks for FBgn0033653 available for purchase.
VDRC has 2 RNAi stocks for FBgn0033653 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain53 14 of 4 0.70Down
Head42 34 of 4 0.60Down
Eye102 44 of 4 1.40Up
Thoracicoabdominal ganglion42 14 of 4 0.60Down
Salivary gland57 44 of 4 0.77None
Crop42 34 of 4 0.60Down
Midgut60 14 of 4 0.80None
Tubule36 13 of 4 0.50Down
Hindgut52 14 of 4 0.70Down
Heart58 34 of 4 0.80None
Fat body53 84 of 4 0.73Down
Ovary136 34 of 4 1.90Up
Testis27 14 of 4 0.40Down
Male accessory glands87 104 of 4 1.20None
Virgin spermatheca28 34 of 4 0.39Down
Mated spermatheca30 34 of 4 0.41Down
Adult carcass55 24 of 4 0.80Down
Larval CNS44 64 of 4 0.60Down
Larval Salivary gland90 64 of 4 1.22None
Larval midgut60 24 of 4 0.83None
Larval tubule78 54 of 4 1.10None
Larval hindgut52 24 of 4 0.72Down
Larval fat body86 74 of 4 1.20None
Larval trachea59 94 of 4 0.80None
Larval carcass48 14 of 4 0.66Down
S2 cells (growing)61 34 of 4 0.83None
Whole fly73 54 of 4

Looking for CG13192-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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