Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13208-RA through 18771 annotations produced 1 hits



Odorant-binding protein 47b (Obp47b):

Annotation Number : CG13208
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033614
Gbrowse : chr2R:7189751-7190481 (-) // 100.0 //
Probeset : 1630326_at
Accessions : protein= NP_610669;, nucleotide= NM_136825;
Interpro : 0005549 // odorant binding // inferred from electronic annotation /// 0005549 // odorant binding // not recorded
FlyMine data for FBgn0033614.
BioGrid reports that CG13208 interacts with CG13389 CG17369 CG17903 CG2216 CG2698 CG6770 CG18730 .
VDRC has 2 RNAi stocks for FBgn0033614 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 1.00None
Head1 ± 00 of 4 2.00None
Eye0 ± 00 of 4 0.88None
Thoracicoabdominal ganglion1 ± 00 of 4 2.00None
Salivary gland4 ± 00 of 4 6.52Up
Crop0 ± 00 of 4 1.20None
Midgut1 ± 00 of 4 2.50Up
Tubule0 ± 00 of 4 1.50Up
Hindgut1 ± 00 of 4 2.90Up
Heart1 ± 10 of 4 2.52None
Fat body1 ± 00 of 4 1.56None
Ovary0 ± 00 of 4 1.00None
Testis1 ± 00 of 4 1.50None
Male accessory glands1 ± 00 of 4 2.20Up
Virgin spermatheca0 ± 00 of 4 1.16None
Mated spermatheca0 ± 00 of 4 1.32None
Adult carcass1 ± 00 of 4 2.10None
Larval CNS0 ± 00 of 4 1.00None
Larval Salivary gland0 ± 00 of 4 1.40Up
Larval midgut1 ± 00 of 4 2.84None
Larval tubule1 ± 00 of 4 1.80None
Larval hindgut0 ± 00 of 4 1.48None
Larval fat body1 ± 00 of 4 1.90None
Larval trachea0 ± 00 of 4 1.04None
Larval carcass1 ± 10 of 4 3.12None
S2 cells (growing)0 ± 00 of 4 1.36None
Whole fly0 ± 00 of 4

Looking for CG13208-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime