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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13211-RA through 18771 annotations produced 2 hits



CG13210 (CG42336):

Annotation Number : CG13211
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259238
Gbrowse : chr2R:7182048-7184980 (-) // 100.0 //
Probeset : 1629625_at
Accessions : protein= NP_001137644; /// NP_610667; /// NP_610668; /// NP_725026;, nucleotide= NM_001144172; /// NM_136823; /// NM_136824; /// NM_136824; /// NM_165820; /// NM_165820;
FlyMine data for FBgn0259238.
BioGrid reports that CG13211 interacts with CG32096 .
VDRC has 3 RNAi stocks for FBgn0259238 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain200 ± 64 of 4 0.90None
Head228 ± 124 of 4 1.10None
Eye215 ± 74 of 4 1.01None
Thoracicoabdominal ganglion132 ± 24 of 4 0.60Down
Salivary gland386 ± 64 of 4 1.82Up
Crop231 ± 144 of 4 1.10None
Midgut326 ± 114 of 4 1.50Up
Tubule75 ± 24 of 4 0.40Down
Hindgut254 ± 84 of 4 1.20None
Heart206 ± 64 of 4 0.97None
Fat body425 ± 1154 of 4 2.00Up
Ovary266 ± 114 of 4 1.30None
Testis413 ± 254 of 4 1.90Up
Male accessory glands607 ± 324 of 4 2.90Up
Virgin spermatheca230 ± 74 of 4 1.08None
Mated spermatheca245 ± 164 of 4 1.15None
Adult carcass179 ± 144 of 4 0.80None
Larval CNS418 ± 564 of 4 1.97Up
Larval Salivary gland705 ± 694 of 4 3.31Up
Larval midgut342 ± 204 of 4 1.61Up
Larval tubule353 ± 174 of 4 1.70Up
Larval hindgut384 ± 74 of 4 1.80Up
Larval fat body2910 ± 3034 of 413.70Up
Larval trachea604 ± 404 of 4 2.84Up
Larval carcass468 ± 414 of 4 2.20Up
S2 cells (growing)749 ± 124 of 4 3.52Up
Whole fly212 ± 234 of 4



CG13210 (CG42336):

Annotation Number : CG13211
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259238
Gbrowse : chr2R:7182048-7184980 (-) // 100.0 //
Probeset : 1633547_a_at
Accessions : protein= NP_001137644; /// NP_610667; /// NP_610668; /// NP_725026;, nucleotide= NM_001144172; /// NM_136823; /// NM_136824; /// NM_136824; /// NM_165820; /// NM_165820;
FlyMine data for FBgn0259238.
BioGrid reports that CG13211 interacts with CG32096 .
VDRC has 3 RNAi stocks for FBgn0259238 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain395 ± 94 of 4 0.60Down
Head636 ± 404 of 4 1.00None
Eye335 ± 154 of 4 0.50Down
Thoracicoabdominal ganglion310 ± 154 of 4 0.50Down
Salivary gland382 ± 174 of 4 0.58Down
Crop320 ± 114 of 4 0.50Down
Midgut1793 ± 1014 of 4 2.70Up
Tubule260 ± 134 of 4 0.40Down
Hindgut543 ± 84 of 4 0.80None
Heart451 ± 454 of 4 0.68Down
Fat body1792 ± 3984 of 4 2.70Up
Ovary540 ± 124 of 4 0.80None
Testis1073 ± 384 of 4 1.60Up
Male accessory glands1025 ± 184 of 4 1.50Up
Virgin spermatheca1467 ± 354 of 4 2.21Up
Mated spermatheca1686 ± 1604 of 4 2.54Up
Adult carcass497 ± 604 of 4 0.70None
Larval CNS788 ± 284 of 4 1.19None
Larval Salivary gland1050 ± 804 of 4 1.58Up
Larval midgut1746 ± 674 of 4 2.63Up
Larval tubule497 ± 154 of 4 0.70Down
Larval hindgut865 ± 324 of 4 1.30Up
Larval fat body3978 ± 4074 of 4 6.00Up
Larval trachea1054 ± 2014 of 4 1.59Up
Larval carcass576 ± 1014 of 4 0.87None
S2 cells (growing)1461 ± 344 of 4 2.20Up
Whole fly664 ± 544 of 4

Looking for CG13211-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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