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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13224-RA through 18771 annotations produced 1 hits



CG13224 (Cpr47Eb):

Annotation Number : CG13224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033598
Gbrowse : chr2R:7142673-7143491 (+) // 100.0 //
Probeset : 1624283_at
Accessions : protein= NP_610655;, nucleotide= NM_136811;
Interpro : 0005214 // structural constituent of chitin-based cuticle // inferred from sequence or structural similarity /// 0008010
FlyMine data for FBgn0033598.
BDGP gene expression has embryonic in situ data for CG13224: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0033598 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.40None
Head8 ± 20 of 4 0.70None
Eye48 ± 183 of 4 4.38None
Thoracicoabdominal ganglion7 ± 00 of 4 0.60None
Salivary gland9 ± 50 of 4 0.88None
Crop8 ± 30 of 4 0.80None
Midgut14 ± 20 of 4 1.30None
Tubule5 ± 10 of 4 0.50Down
Hindgut11 ± 20 of 4 1.10None
Heart6 ± 00 of 4 0.59None
Fat body18 ± 50 of 4 1.66None
Ovary6 ± 20 of 4 0.60None
Testis2 ± 10 of 4 0.20None
Male accessory glands17 ± 41 of 4 1.60None
Virgin spermatheca3 ± 10 of 4 0.34None
Mated spermatheca8 ± 10 of 4 0.73None
Adult carcass9 ± 30 of 4 0.80None
Larval CNS8 ± 20 of 4 0.77None
Larval Salivary gland123 ± 134 of 411.20Up
Larval midgut16 ± 00 of 4 1.49None
Larval tubule12 ± 30 of 4 1.10None
Larval hindgut1092 ± 464 of 498.86Up
Larval fat body17 ± 20 of 4 1.60None
Larval trachea4653 ± 6364 of 4421.13Up
Larval carcass747 ± 1284 of 467.67Up
S2 cells (growing)15 ± 20 of 4 1.39None
Whole fly11 ± 30 of 4

Looking for CG13224-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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