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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13235-RA through 18771 annotations produced 1 hits



(CG13235):

Annotation Number : CG13235
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040766
Gbrowse : chr2R:6968553-6968721 (+) // 100.0 //
Probeset : 1624602_at
Accessions : protein= NP_652390;, nucleotide= NM_144133;
FlyMine data for FBgn0040766.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.70None
Head4 ± 10 of 4 0.70None
Eye1 ± 00 of 4 0.26Down
Thoracicoabdominal ganglion8 ± 33 of 4 1.20None
Salivary gland23 ± 51 of 4 3.42None
Crop11 ± 10 of 4 1.70Up
Midgut27 ± 20 of 4 4.00Up
Tubule12 ± 12 of 4 1.90Up
Hindgut8 ± 10 of 4 1.30None
Heart2 ± 00 of 4 0.39Down
Fat body15 ± 123 of 4 2.26None
Ovary5 ± 00 of 4 0.80None
Testis2 ± 00 of 4 0.40Down
Male accessory glands11 ± 20 of 4 1.70None
Virgin spermatheca17 ± 23 of 4 2.50Up
Mated spermatheca14 ± 52 of 4 2.16None
Adult carcass15 ± 10 of 4 2.20Up
Larval CNS9 ± 24 of 4 1.37None
Larval Salivary gland9 ± 12 of 4 1.32None
Larval midgut25 ± 60 of 4 3.73None
Larval tubule8 ± 12 of 4 1.20None
Larval hindgut9 ± 00 of 4 1.37None
Larval fat body6 ± 10 of 4 0.90None
Larval trachea6 ± 22 of 4 0.95None
Larval carcass8 ± 00 of 4 1.18None
S2 cells (growing)7 ± 02 of 4 1.07None
Whole fly6 ± 10 of 4

Looking for CG13235-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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