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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13240-RB through 18771 annotations produced 1 hits



lethal (2) 35Di (l(2)35Di):

Annotation Number : CG13240
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001989
Gbrowse : chr2L:15750407-15751054 (-) // 100.0 //
Probeset : 1630062_a_at
Accessions : protein= NP_609765; /// NP_723927;, nucleotide= NM_135921; /// NM_165126;
Pathway : NADH to ubiquinone // inferred from sequence or structural similarity /// 0055114 // oxidation reduction // inferred fr
Interpro : 0005747 // mitochondrial respiratory chain complex I // inferred from sequence or structural similarity
FlyMine data for FBgn0001989.
VDRC has 2 RNAi stocks for FBgn0001989 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain595 154 of 4 1.10Up
Head666 84 of 4 1.30Up
Eye997 364 of 4 1.91Up
Thoracicoabdominal ganglion770 74 of 4 1.50Up
Salivary gland1235 94 of 4 2.37Up
Crop540 284 of 4 1.00None
Midgut667 94 of 4 1.30Up
Tubule654 284 of 4 1.30Up
Hindgut1047 284 of 4 2.00Up
Heart705 274 of 4 1.35Up
Fat body674 844 of 4 1.29Up
Ovary293 34 of 4 0.60Down
Testis225 134 of 4 0.40Down
Male accessory glands543 384 of 4 1.00None
Virgin spermatheca469 274 of 4 0.90None
Mated spermatheca398 114 of 4 0.76Down
Adult carcass1260 724 of 4 2.40Up
Larval CNS345 264 of 4 0.66Down
Larval Salivary gland629 494 of 4 1.21None
Larval midgut496 64 of 4 0.95None
Larval tubule542 364 of 4 1.00None
Larval hindgut665 204 of 4 1.28Up
Larval fat body300 234 of 4 0.60Down
Larval trachea411 484 of 4 0.79Down
Larval carcass575 414 of 4 1.11None
S2 cells (growing)388 94 of 4 0.75Down
Whole fly521 224 of 4

Looking for CG13240-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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