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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13245-RA through 18771 annotations produced 1 hits



(CG13245):

Annotation Number : CG13245
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0045827
Gbrowse : chr2L:16004571-16005467 (+) // 100.0 //
Probeset : 1631211_at
Accessions : protein= NP_652575;, nucleotide= NM_144318;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0045827.
BioGrid reports that CG13245 interacts with CG9653 CG9706 CG6202 .
VDRC has 4 RNAi stocks for FBgn0045827 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 ± 04 of 4 0.00Down
Head5 ± 10 of 4 0.00Down
Eye4 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion9 ± 11 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.01Down
Crop1 ± 00 of 4 0.00Down
Midgut14 ± 00 of 4 0.00Down
Tubule5 ± 00 of 4 0.00Down
Hindgut5 ± 10 of 4 0.00Down
Heart2 ± 00 of 4 0.00Down
Fat body5 ± 30 of 4 0.01Down
Ovary3 ± 00 of 4 0.00Down
Testis2995 ± 1274 of 4 5.70Up
Male accessory glands29 ± 24 of 4 0.10Down
Virgin spermatheca6 ± 10 of 4 0.01Down
Mated spermatheca11 ± 20 of 4 0.02Down
Adult carcass16 ± 21 of 4 0.00Down
Larval CNS8 ± 14 of 4 0.02Down
Larval Salivary gland4 ± 00 of 4 0.01Down
Larval midgut12 ± 20 of 4 0.02Down
Larval tubule4 ± 20 of 4 0.00Down
Larval hindgut4 ± 00 of 4 0.01Down
Larval fat body311 ± 1674 of 4 0.60None
Larval trachea18 ± 202 of 4 0.04Down
Larval carcass9 ± 11 of 4 0.02Down
S2 cells (growing)3 ± 10 of 4 0.01Down
Whole fly529 ± 84 of 4

Looking for CG13245-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime