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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13251-RA through 18771 annotations produced 1 hits



(CG13251):

Annotation Number : CG13251
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037014
Gbrowse : chr3L:20630329-20633895 (+) // 100.0 //
Probeset : 1632965_at
Accessions : protein= NP_649246;, nucleotide= NM_140989;
FlyMine data for FBgn0037014.
VDRC has 2 RNAi stocks for FBgn0037014 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.40None
Head10 31 of 4 2.60None
Eye2 00 of 4 0.66None
Thoracicoabdominal ganglion2 00 of 4 0.60None
Salivary gland15 40 of 4 3.91None
Crop6 20 of 4 1.60None
Midgut3 10 of 4 0.90None
Tubule3 00 of 4 0.80Down
Hindgut2 00 of 4 0.60None
Heart1 00 of 4 0.30None
Fat body2 10 of 4 0.60None
Ovary1 00 of 4 0.30None
Testis4 10 of 4 1.20None
Male accessory glands9 10 of 4 2.30None
Virgin spermatheca1 00 of 4 0.29None
Mated spermatheca1 00 of 4 0.28None
Adult carcass8 50 of 4 2.00None
Larval CNS2 10 of 4 0.55None
Larval Salivary gland1 00 of 4 0.37None
Larval midgut2 00 of 4 0.66None
Larval tubule1 00 of 4 0.40None
Larval hindgut0 00 of 4 0.20None
Larval fat body2 00 of 4 0.50None
Larval trachea1 00 of 4 0.26None
Larval carcass3 00 of 4 0.94None
S2 cells (growing)0 00 of 4 0.21None
Whole fly4 11 of 4

Looking for CG13251-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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