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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13281-RA through 18771 annotations produced 1 hits



CAS/CSE1 segregation protein (Cas):

Annotation Number : CG13281
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0022213
Gbrowse : chr2L:16821149-16825206 (-) // 100.0 //
Probeset : 1637053_at
Accessions : protein= NP_523588;, nucleotide= NM_078864;
Pathway : engulfment // inferred from mutant phenotype /// 0006915 // apoptosis // inferred from sequence or structural similarit
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005634 // nucleus // non-traceable author statement /// 0
FlyMine data for FBgn0022213.
BioGrid reports that CG13281 interacts with CG1609 CG15781 CG17255 CG4795 CG4799 CG6707 CG8548 Dmel CG34120 CG17757 .
TRiP has 2 RNAi stocks for FBgn0022213 available for purchase.
VDRC has 3 RNAi stocks for FBgn0022213 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain105 34 of 4 0.20Down
Head108 54 of 4 0.20Down
Eye94 44 of 4 0.17Down
Thoracicoabdominal ganglion115 24 of 4 0.20Down
Salivary gland139 114 of 4 0.24Down
Crop199 54 of 4 0.30Down
Midgut199 34 of 4 0.30Down
Tubule203 154 of 4 0.40Down
Hindgut144 24 of 4 0.30Down
Heart124 24 of 4 0.22Down
Fat body159 74 of 4 0.28Down
Ovary1051 114 of 4 1.80Up
Testis174 84 of 4 0.30Down
Male accessory glands164 44 of 4 0.30Down
Virgin spermatheca217 174 of 4 0.38Down
Mated spermatheca228 104 of 4 0.40Down
Adult carcass129 14 of 4 0.20Down
Larval CNS685 224 of 4 1.20None
Larval Salivary gland398 154 of 4 0.70Down
Larval midgut198 64 of 4 0.35Down
Larval tubule225 64 of 4 0.40Down
Larval hindgut265 44 of 4 0.47Down
Larval fat body175 74 of 4 0.30Down
Larval trachea440 494 of 4 0.77Down
Larval carcass370 144 of 4 0.65Down
S2 cells (growing)667 84 of 4 1.17None
Whole fly570 394 of 4

Looking for CG13281-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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