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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13290-RA through 18771 annotations produced 1 hits



/// (CG33993 /// DwilCG33993):

Annotation Number : CG13290
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053993
Gbrowse : chr3L:5930378-5943755 (-) // 100.0 //
Probeset : 1628447_at
Accessions : protein= NP_001033991; /// NP_001163352;, nucleotide= NM_001038902; /// NM_001169881;
Interpro : 0005515 // protein binding // inferred from electronic annotation
FlyMine data for FBgn0053993.
VDRC has 4 RNAi stocks for FBgn0053993 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 13 of 4 1.10None
Head8 ± 10 of 4 1.30None
Eye6 ± 11 of 4 0.93None
Thoracicoabdominal ganglion5 ± 20 of 4 0.80None
Salivary gland7 ± 20 of 4 1.09None
Crop3 ± 10 of 4 0.50None
Midgut9 ± 20 of 4 1.40None
Tubule11 ± 12 of 4 1.70Up
Hindgut8 ± 10 of 4 1.30None
Heart4 ± 11 of 4 0.72None
Fat body10 ± 50 of 4 1.52None
Ovary3 ± 10 of 4 0.50None
Testis3 ± 10 of 4 0.50None
Male accessory glands6 ± 20 of 4 1.00None
Virgin spermatheca7 ± 10 of 4 1.11None
Mated spermatheca4 ± 00 of 4 0.59None
Adult carcass2 ± 00 of 4 0.40Down
Larval CNS8 ± 23 of 4 1.31None
Larval Salivary gland8 ± 10 of 4 1.24None
Larval midgut9 ± 20 of 4 1.34None
Larval tubule6 ± 10 of 4 1.00None
Larval hindgut3 ± 00 of 4 0.49Down
Larval fat body3 ± 00 of 4 0.50Down
Larval trachea6 ± 40 of 4 0.97None
Larval carcass4 ± 10 of 4 0.66None
S2 cells (growing)6 ± 20 of 4 0.93None
Whole fly6 ± 10 of 4

Looking for CG13290-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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