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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13296-RA through 18771 annotations produced 1 hits



(CG13296):

Annotation Number : CG13296
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035687
Gbrowse : chr3L:6156256-6157782 (+) // 100.0 //
Probeset : 1637502_at
Accessions : protein= NP_648032;, nucleotide= NM_139775;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0035687.
Homophila reports that CG13296 is a close match (7e-11) to human gene SLUG;SNAI2;WS2D (NP_003059), a gene associated with Melanoma metastasis, modification of (1);Piebaldism, 172800 (3);Waardenburg syndrome, type IID, 608890 (3).
VDRC has 3 RNAi stocks for FBgn0035687 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 1.20None
Head2 10 of 4 1.30None
Eye2 10 of 4 1.59None
Thoracicoabdominal ganglion5 20 of 4 3.20None
Salivary gland3 10 of 4 1.86None
Crop2 10 of 4 1.50None
Midgut1 00 of 4 0.70None
Tubule1 00 of 4 0.60Down
Hindgut1 00 of 4 0.70None
Heart2 10 of 4 1.20None
Fat body6 20 of 4 3.44None
Ovary2 10 of 4 1.40None
Testis2 00 of 4 1.50None
Male accessory glands4 20 of 4 2.60None
Virgin spermatheca1 00 of 4 0.73None
Mated spermatheca2 00 of 4 1.44None
Adult carcass1 00 of 4 0.90None
Larval CNS10 11 of 4 6.04Up
Larval Salivary gland6 20 of 4 3.80None
Larval midgut1 00 of 4 0.84None
Larval tubule3 10 of 4 1.70None
Larval hindgut0 00 of 4 0.37None
Larval fat body5 10 of 4 3.00None
Larval trachea1 10 of 4 1.01None
Larval carcass1 00 of 4 0.67None
S2 cells (growing)0 00 of 4 0.51None
Whole fly1 00 of 4

Looking for CG13296-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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