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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13311-RA through 18771 annotations produced 1 hits



(CG13311):

Annotation Number : CG13311
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035929
Gbrowse : chr3L:8794637-8795262 (-) // 100.0 //
Probeset : 1634064_at
Accessions : protein= NP_648258;, nucleotide= NM_140001;
Interpro : 0005198 // structural molecule activity // non-traceable author statement /// 0016787 // hydrolase activity // inferred
FlyMine data for FBgn0035929.
BDGP gene expression has embryonic in situ data for CG13311: 4 pix of staining in 1 body parts.
BioGrid reports that CG13311 interacts with CG15781 CG4608 CG6684 CG6770 CG8181 CG9653 CG9911 .
VDRC has 2 RNAi stocks for FBgn0035929 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head2 00 of 4 0.10Down
Eye3 10 of 4 0.12Down
Thoracicoabdominal ganglion1 00 of 4 0.00Down
Salivary gland2 00 of 4 0.09Down
Crop2 10 of 4 0.10Down
Midgut2 00 of 4 0.10Down
Tubule1876 3194 of 462.80Up
Hindgut1 00 of 4 0.00Down
Heart3 10 of 4 0.11Down
Fat body13 181 of 4 0.44None
Ovary0 00 of 4 0.00Down
Testis1 00 of 4 0.10Down
Male accessory glands3 00 of 4 0.10Down
Virgin spermatheca4 10 of 4 0.15Down
Mated spermatheca3 10 of 4 0.12Down
Adult carcass8 10 of 4 0.30Down
Larval CNS0 00 of 4 0.03Down
Larval Salivary gland1 00 of 4 0.06Down
Larval midgut2 00 of 4 0.08Down
Larval tubule2411 1794 of 480.70Up
Larval hindgut23 73 of 4 0.78None
Larval fat body3 10 of 4 0.10Down
Larval trachea1 00 of 4 0.04Down
Larval carcass3 10 of 4 0.12Down
S2 cells (growing)1 00 of 4 0.04Down
Whole fly29 54 of 4

Looking for CG13311-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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