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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13312-RA through 18771 annotations produced 1 hits



(CG13312):

Annotation Number : CG13312
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035931
Gbrowse : chr3L:8798927-8800298 (-) // 100.0 //
Probeset : 1629935_at
Accessions : protein= NP_648260;, nucleotide= NM_140003;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0008061 // chitin binding // inferred from electronic annotation
FlyMine data for FBgn0035931.
BioGrid reports that CG13312 interacts with CG13482 CG15781 CG6357 CG17757 .
VDRC has 2 RNAi stocks for FBgn0035931 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 1.40None
Head1 ± 00 of 4 0.80None
Eye2 ± 00 of 4 1.23None
Thoracicoabdominal ganglion5 ± 21 of 4 2.70None
Salivary gland5 ± 20 of 4 2.57None
Crop2 ± 10 of 4 1.40None
Midgut5 ± 10 of 4 2.80None
Tubule8 ± 10 of 4 4.30Up
Hindgut1 ± 00 of 4 1.00None
Heart1 ± 00 of 4 0.79None
Fat body8 ± 70 of 4 4.17None
Ovary0 ± 00 of 4 0.20None
Testis1 ± 00 of 4 1.00None
Male accessory glands1 ± 00 of 4 0.80None
Virgin spermatheca3 ± 10 of 4 1.83None
Mated spermatheca4 ± 10 of 4 2.48None
Adult carcass3 ± 10 of 4 1.70None
Larval CNS2 ± 10 of 4 1.31None
Larval Salivary gland2 ± 00 of 4 1.04None
Larval midgut7 ± 20 of 4 3.70None
Larval tubule277 ± 444 of 4144.30Up
Larval hindgut10 ± 12 of 4 5.31Up
Larval fat body4 ± 10 of 4 2.40None
Larval trachea2 ± 20 of 4 1.25None
Larval carcass4 ± 11 of 4 2.17None
S2 cells (growing)1 ± 00 of 4 0.79None
Whole fly1 ± 00 of 4

Looking for CG13312-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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