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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13320-RA through 18771 annotations produced 1 hits



Sans (Sans):

Annotation Number : CG13320
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033785
Gbrowse : chr2R:8824399-8827917 (+) // 100.0 //
Probeset : 1636906_s_at
Accessions : protein= NP_610829; /// NP_788340;, nucleotide= NM_136985; /// NM_176160;
Pathway : 0005737 // cytoplasm // inferred from sequence or structural similarity /// 0005769 // early endosome // inferred from d
Interpro : 0005515 // protein binding // inferred from sequence or structural similarity
FlyMine data for FBgn0033785.
BDGP gene expression has embryonic in situ data for CG13320: 15 pix of staining in 9 body parts.
Homophila reports that CG13320 is a close match (3e-39) to human gene SANS;USH1G (NP_775748), a gene associated with Usher syndrome, type 1G, 606943 (3).
BioGrid reports that CG13320 interacts with CG3082 .
VDRC has 2 RNAi stocks for FBgn0033785 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.20Down
Head4 30 of 4 0.60None
Eye8 21 of 4 1.15None
Thoracicoabdominal ganglion3 10 of 4 0.50None
Salivary gland12 50 of 4 1.68None
Crop2 10 of 4 0.40None
Midgut15 30 of 4 2.00None
Tubule3 00 of 4 0.40Down
Hindgut4 10 of 4 0.60None
Heart3 20 of 4 0.40None
Fat body0 00 of 4 0.10Down
Ovary3 10 of 4 0.40Down
Testis37 14 of 4 5.00Up
Male accessory glands1 00 of 4 0.20Down
Virgin spermatheca7 10 of 4 1.02None
Mated spermatheca10 30 of 4 1.33None
Adult carcass3 10 of 4 0.50Down
Larval CNS3 30 of 4 0.46None
Larval Salivary gland2 00 of 4 0.27Down
Larval midgut60 64 of 4 7.94Up
Larval tubule3 10 of 4 0.50None
Larval hindgut10 20 of 4 1.31None
Larval fat body2 00 of 4 0.40Down
Larval trachea15 52 of 4 2.04None
Larval carcass18 11 of 4 2.45Up
S2 cells (growing)0 00 of 4 0.10Down
Whole fly7 01 of 4

Looking for CG13320-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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