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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13321-RA through 18771 annotations produced 1 hits



(CG13321):

Annotation Number : CG13321
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033787
Gbrowse : chr2R:8841060-8842680 (+) // 100.0 //
Probeset : 1631154_at
Accessions : protein= NP_610831;, nucleotide= NM_136987;
FlyMine data for FBgn0033787.
BDGP gene expression has embryonic in situ data for CG13321: 12 pix of staining in 3 body parts.
BioGrid reports that CG13321 interacts with CG13928 CG18067 CG3884 CG13488 CG14079 CG14534 CG15308 CG15482 CG18336 CG3062 CG3151 CG3727 CG4216 CG4220 CG5890 CG6509 CG6945 CG7765 CG7838 CG8292 CG8981 CG9108 CG9968 Dmel CG14425 .
VDRC has 3 RNAi stocks for FBgn0033787 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head8 ± 11 of 4 0.00Down
Eye8 ± 32 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland12 ± 30 of 4 0.04Down
Crop3 ± 20 of 4 0.00Down
Midgut2872 ± 244 of 4 8.20Up
Tubule3961 ± 3744 of 411.30Up
Hindgut535 ± 194 of 4 1.50Up
Heart7 ± 11 of 4 0.02Down
Fat body17 ± 211 of 4 0.05Down
Ovary29 ± 24 of 4 0.10Down
Testis26 ± 54 of 4 0.10Down
Male accessory glands13 ± 32 of 4 0.00Down
Virgin spermatheca7 ± 20 of 4 0.02Down
Mated spermatheca13 ± 11 of 4 0.04Down
Adult carcass8 ± 30 of 4 0.00Down
Larval CNS7 ± 30 of 4 0.02Down
Larval Salivary gland12 ± 33 of 4 0.04Down
Larval midgut3153 ± 1514 of 4 9.03Up
Larval tubule3244 ± 434 of 4 9.30Up
Larval hindgut1088 ± 624 of 4 3.11Up
Larval fat body13 ± 21 of 4 0.00Down
Larval trachea8 ± 22 of 4 0.02Down
Larval carcass6 ± 10 of 4 0.02Down
S2 cells (growing)42 ± 24 of 4 0.12Down
Whole fly349 ± 434 of 4

Looking for CG13321-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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