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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13325-RA through 18771 annotations produced 1 hits



(CG13325):

Annotation Number : CG13325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033792
Gbrowse : chr2R:9003809-9013285 (+) // 100.0 //
Probeset : 1625235_at
Accessions : protein= NP_610836;, nucleotide= NM_136992;
Interpro : "0008415 // acyltransferase activity // inferred from electronic annotation /// 0016740 // transferase activity // infer
FlyMine data for FBgn0033792.
BDGP gene expression has embryonic in situ data for CG13325: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0033792 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain25 ± 04 of 4 1.40None
Head5 ± 11 of 4 0.30None
Eye0 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion27 ± 14 of 4 1.50None
Salivary gland4 ± 20 of 4 0.24Down
Crop3 ± 10 of 4 0.20Down
Midgut304 ± 294 of 417.10Up
Tubule1 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart2 ± 00 of 4 0.13Down
Fat body3 ± 20 of 4 0.19Down
Ovary0 ± 00 of 4 0.00Down
Testis4 ± 10 of 4 0.30None
Male accessory glands4 ± 10 of 4 0.30None
Virgin spermatheca1 ± 00 of 4 0.09Down
Mated spermatheca1 ± 00 of 4 0.11Down
Adult carcass3 ± 10 of 4 0.20Down
Larval CNS7 ± 11 of 4 0.41None
Larval Salivary gland2 ± 10 of 4 0.12Down
Larval midgut267 ± 284 of 415.08Up
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut1 ± 00 of 4 0.10Down
Larval fat body1 ± 00 of 4 0.10Down
Larval trachea2 ± 20 of 4 0.15Down
Larval carcass2 ± 00 of 4 0.12Down
S2 cells (growing)1 ± 00 of 4 0.06Down
Whole fly17 ± 42 of 4

Looking for CG13325-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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