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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13329-RA through 18771 annotations produced 1 hits



centromere identifier (cid):

Annotation Number : CG13329
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040477
Gbrowse : chr2R:9373105-9374135 (+) // 100.0 //
Probeset : 1625258_at
Accessions : protein= NP_523730;, nucleotide= NM_079006;
Pathway : "0000775 // chromosome
Interpro : centromeric region // non-traceable author statement /// 0000775 // chromosome
FlyMine data for FBgn0040477.
BioGrid reports that CG13329 interacts with CG4162 .
TRiP has 1 RNAi stocks for FBgn0040477 available for purchase.
VDRC has 3 RNAi stocks for FBgn0040477 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 12 of 4 0.10Down
Head6 00 of 4 0.10Down
Eye3 00 of 4 0.04Down
Thoracicoabdominal ganglion58 54 of 4 0.60Down
Salivary gland10 00 of 4 0.10Down
Crop2 20 of 4 0.00Down
Midgut10 12 of 4 0.10Down
Tubule5 10 of 4 0.10Down
Hindgut5 10 of 4 0.10Down
Heart6 10 of 4 0.07Down
Fat body8 42 of 4 0.09Down
Ovary283 94 of 4 2.90Up
Testis17 14 of 4 0.20Down
Male accessory glands5 10 of 4 0.10Down
Virgin spermatheca10 13 of 4 0.11Down
Mated spermatheca6 20 of 4 0.07Down
Adult carcass12 31 of 4 0.10Down
Larval CNS61 24 of 4 0.63Down
Larval Salivary gland15 24 of 4 0.16Down
Larval midgut10 03 of 4 0.10Down
Larval tubule6 10 of 4 0.10Down
Larval hindgut14 04 of 4 0.15Down
Larval fat body11 31 of 4 0.10Down
Larval trachea18 34 of 4 0.19Down
Larval carcass11 21 of 4 0.12Down
S2 cells (growing)50 04 of 4 0.52Down
Whole fly97 54 of 4

Looking for CG13329-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime