FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG13358-RA through 18771 annotations produced 1 hits

(CG13358):

Annotation Number : CG13358
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026874
Gbrowse : chrX:697953-699552 (-) // 100.0 //
Probeset : 1638666_at
Accessions : protein= NP_569862;, nucleotide= NM_130506;
FlyMine data for FBgn0026874.
BioGrid reports that CG13358 interacts with CG15109 CG6033 CG7135 CG8590 .
VDRC has 1 RNAi stocks for FBgn0026874 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	5 ± 2	0 of 4	1.10	None
Head	3 ± 1	0 of 4	0.80	None
Eye	2 ± 1	0 of 4	0.52	None
Thoracicoabdominal ganglion	4 ± 2	0 of 4	0.90	None
Salivary gland	13 ± 5	0 of 4	2.67	None
Crop	3 ± 1	0 of 4	0.70	None
Midgut	7 ± 5	0 of 4	1.50	None
Tubule	3 ± 0	0 of 4	0.70	Down
Hindgut	7 ± 3	0 of 4	1.40	None
Heart	2 ± 0	0 of 4	0.50	None
Fat body	15 ± 4	0 of 4	2.97	Up
Ovary	5 ± 2	0 of 4	1.10	None
Testis	2 ± 0	0 of 4	0.50	None
Male accessory glands	9 ± 1	0 of 4	1.80	None
Virgin spermatheca	4 ± 1	0 of 4	0.90	None
Mated spermatheca	2 ± 1	0 of 4	0.57	None
Adult carcass	7 ± 2	0 of 4	1.40	None
Larval CNS	11 ± 1	0 of 4	2.25	Up
Larval Salivary gland	7 ± 1	0 of 4	1.48	None
Larval midgut	13 ± 2	0 of 4	2.59	Up
Larval tubule	6 ± 1	0 of 4	1.30	None
Larval hindgut	8 ± 2	0 of 4	1.64	None
Larval fat body	5 ± 2	0 of 4	1.10	None
Larval trachea	6 ± 2	0 of 4	1.37	None
Larval carcass	7 ± 1	0 of 4	1.43	None
S2 cells (growing)	23 ± 1	0 of 4	4.72	Up
Whole fly	5 ± 1	0 of 4

Looking for CG13358-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720