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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13360-RA through 18771 annotations produced 1 hits


Annotation Number : CG13360
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025620
Gbrowse : chrX:681881-684122 (-) // 100.0 //
Probeset : 1641711_at
Accessions : protein= NP_569859;, nucleotide= NM_130503;
FlyMine data for FBgn0025620.
BDGP gene expression has embryonic in situ data for EG:34F3.5: 27 pix of staining in 5 body parts.
VDRC has 2 RNAi stocks for FBgn0025620 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 44 of 4 0.30Down
Head197 284 of 4 1.80Up
Eye37 64 of 4 0.34Down
Thoracicoabdominal ganglion7 11 of 4 0.10Down
Salivary gland5 30 of 4 0.05Down
Crop8 30 of 4 0.10Down
Midgut378 104 of 4 3.50Up
Tubule8 11 of 4 0.10Down
Hindgut38 44 of 4 0.40Down
Heart439 304 of 4 4.01Up
Fat body1178 1574 of 410.74Up
Ovary2 00 of 4 0.00Down
Testis50 14 of 4 0.50Down
Male accessory glands6 20 of 4 0.10Down
Virgin spermatheca482 184 of 4 4.40Up
Mated spermatheca487 394 of 4 4.45Up
Adult carcass532 154 of 4 4.90Up
Larval CNS2 10 of 4 0.02Down
Larval Salivary gland62 84 of 4 0.57Down
Larval midgut7 10 of 4 0.07Down
Larval tubule2 10 of 4 0.00Down
Larval hindgut119 364 of 4 1.09None
Larval fat body790 484 of 4 7.20Up
Larval trachea47 444 of 4 0.43None
Larval carcass29 54 of 4 0.26Down
S2 cells (growing)3 00 of 4 0.03Down
Whole fly109 124 of 4

Looking for CG13360-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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