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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13374-RA through 18771 annotations produced 1 hits


scute beta (pcl):

Annotation Number : CG13374
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0011822
Gbrowse : chrX:330218-331475 (-) // 100.0 //
Probeset : 1633955_at
Accessions : protein= NP_525030;, nucleotide= NM_080291;
Interpro : 0004190 // aspartic-type endopeptidase activity // inferred from sequence or structural similarity /// 0004190 // aspart
FlyMine data for FBgn0011822.
Homophila reports that CG13374 is a close match (1e-60) to human gene REN (NP_000528), a gene associated with Renal tubular dysgenesis, 267430 (3);[Hyperproreninemia] (3).
TRiP has 2 RNAi stocks for FBgn0011822 available for purchase.
VDRC has 1 RNAi stocks for FBgn0011822 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head4 ± 20 of 4 0.10Down
Eye1 ± 00 of 4 0.03Down
Thoracicoabdominal ganglion7 ± 10 of 4 0.10Down
Salivary gland10 ± 21 of 4 0.19Down
Crop5 ± 10 of 4 0.10Down
Midgut834 ± 364 of 415.10Up
Tubule5 ± 00 of 4 0.10Down
Hindgut18 ± 24 of 4 0.30None
Heart0 ± 00 of 4 0.01Down
Fat body7 ± 20 of 4 0.13Down
Ovary4 ± 10 of 4 0.10Down
Testis1 ± 00 of 4 0.00Down
Male accessory glands9 ± 30 of 4 0.20Down
Virgin spermatheca7 ± 10 of 4 0.13Down
Mated spermatheca7 ± 10 of 4 0.14Down
Adult carcass2 ± 10 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland1 ± 00 of 4 0.03Down
Larval midgut1106 ± 1054 of 420.07Up
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut2 ± 10 of 4 0.04Down
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea1 ± 10 of 4 0.03Down
Larval carcass0 ± 00 of 4 0.02Down
S2 cells (growing)3 ± 01 of 4 0.06Down
Whole fly55 ± 124 of 4

Looking for CG13374-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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