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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13384-RA through 18771 annotations produced 1 hits



(CG13384):

Annotation Number : CG13384
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032036
Gbrowse : chr2L:8384466-8388747 (+) // 100.0 //
Probeset : 1631237_s_at
Accessions : protein= NP_723383; /// NP_723384; /// NP_723385; /// NP_723386; /// NP_995657; /// NP_995658;, nucleotide= NM_164812; /// NM_164813; /// NM_164814; /// NM_164815; /// NM_205935; /// NM_205936;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0032036.
BioGrid reports that CG13384 interacts with CG32648 .
TRiP has 1 RNAi stocks for FBgn0032036 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032036 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain631 ± 34 of 4 3.20Up
Head265 ± 144 of 4 1.40Up
Eye175 ± 54 of 4 0.89None
Thoracicoabdominal ganglion595 ± 64 of 4 3.00Up
Salivary gland221 ± 124 of 4 1.13None
Crop175 ± 64 of 4 0.90None
Midgut139 ± 64 of 4 0.70Down
Tubule504 ± 204 of 4 2.60Up
Hindgut273 ± 94 of 4 1.40Up
Heart515 ± 474 of 4 2.64Up
Fat body140 ± 214 of 4 0.72Down
Ovary296 ± 64 of 4 1.50Up
Testis82 ± 04 of 4 0.40Down
Male accessory glands120 ± 24 of 4 0.60Down
Virgin spermatheca138 ± 84 of 4 0.71Down
Mated spermatheca145 ± 84 of 4 0.74Down
Adult carcass161 ± 74 of 4 0.80Down
Larval CNS258 ± 124 of 4 1.32Up
Larval Salivary gland202 ± 74 of 4 1.04None
Larval midgut134 ± 74 of 4 0.69Down
Larval tubule122 ± 24 of 4 0.60Down
Larval hindgut153 ± 64 of 4 0.79Down
Larval fat body550 ± 344 of 4 2.80Up
Larval trachea173 ± 114 of 4 0.89None
Larval carcass154 ± 84 of 4 0.79Down
S2 cells (growing)1151 ± 264 of 4 5.88Up
Whole fly195 ± 94 of 4

Looking for CG13384-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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