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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13388-RA through 18771 annotations produced 1 hits



A kinase anchor protein 200 (Akap200):

Annotation Number : CG13388
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0027932
Gbrowse : chr2L:8415689-8430984 (+) // 100.0 //
Probeset : 1640838_s_at
Accessions : protein= NP_477459; /// NP_477460; /// NP_723395; /// NP_787998;, nucleotide= NM_058111; /// NM_058112; /// NM_164820; /// NM_175984;
Pathway : 0005811 // lipid particle // inferred from direct assay
Interpro : 0016301 // kinase activity // inferred from electronic annotation /// 0051018 // protein kinase A binding // inferred fr
FlyMine data for FBgn0027932.
BDGP gene expression has embryonic in situ data for Akap200: 10 pix of staining in 8 body parts.
BioGrid reports that CG13388 interacts with CG31958 CG4767 CG3978 CG9375 CG7524 .
TRiP has 3 RNAi stocks for FBgn0027932 available for purchase.
VDRC has 3 RNAi stocks for FBgn0027932 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain856 224 of 4 1.00None
Head973 534 of 4 1.20None
Eye1032 664 of 4 1.24Up
Thoracicoabdominal ganglion757 134 of 4 0.90None
Salivary gland443 114 of 4 0.53Down
Crop368 214 of 4 0.40Down
Midgut1047 674 of 4 1.30Up
Tubule186 284 of 4 0.20Down
Hindgut386 104 of 4 0.50Down
Heart1775 1194 of 4 2.13Up
Fat body1872 2694 of 4 2.25Up
Ovary1047 124 of 4 1.30Up
Testis560 214 of 4 0.70Down
Male accessory glands1781 664 of 4 2.10Up
Virgin spermatheca2049 794 of 4 2.46Up
Mated spermatheca2084 1314 of 4 2.51Up
Adult carcass940 724 of 4 1.10None
Larval CNS2294 844 of 4 2.76Up
Larval Salivary gland1557 284 of 4 1.87Up
Larval midgut1881 664 of 4 2.26Up
Larval tubule1063 634 of 4 1.30Up
Larval hindgut1138 614 of 4 1.37Up
Larval fat body2829 2544 of 4 3.40Up
Larval trachea2214 1594 of 4 2.66Up
Larval carcass620 754 of 4 0.75None
S2 cells (growing)3040 614 of 4 3.66Up
Whole fly831 274 of 4

Looking for CG13388-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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