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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1339-RA through 18771 annotations produced 1 hits



Gr43b (Gr43b):

Annotation Number : CG1339
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033202
Gbrowse : chr2R:3546760-3548123 (-) // 100.0 //
Probeset : 1627468_at
Accessions : protein= NP_610307;, nucleotide= NM_136463;
Pathway : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
Interpro : 0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferre
FlyMine data for FBgn0033202.
BioGrid reports that CG1339 interacts with CG31012 .
VDRC has 2 RNAi stocks for FBgn0033202 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.10None
Head2 10 of 4 0.50None
Eye1 00 of 4 0.25None
Thoracicoabdominal ganglion4 10 of 4 0.80None
Salivary gland4 20 of 4 0.96None
Crop8 10 of 4 1.80None
Midgut1 00 of 4 0.30None
Tubule5 10 of 4 1.10None
Hindgut5 10 of 4 1.10None
Heart2 00 of 4 0.57None
Fat body3 20 of 4 0.70None
Ovary2 00 of 4 0.40None
Testis1 00 of 4 0.30None
Male accessory glands9 21 of 4 1.90None
Virgin spermatheca2 00 of 4 0.56None
Mated spermatheca5 10 of 4 1.12None
Adult carcass2 00 of 4 0.50None
Larval CNS3 20 of 4 0.65None
Larval Salivary gland7 10 of 4 1.47None
Larval midgut1 00 of 4 0.27None
Larval tubule5 10 of 4 1.10None
Larval hindgut3 10 of 4 0.73None
Larval fat body5 20 of 4 1.20None
Larval trachea1 10 of 4 0.33None
Larval carcass3 00 of 4 0.66None
S2 cells (growing)3 00 of 4 0.67None
Whole fly4 10 of 4

Looking for CG1339-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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