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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13396-RA through 18771 annotations produced 1 hits



fuzzy (fy):

Annotation Number : CG13396
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0001084
Gbrowse : chr2L:8401445-8403442 (-) // 100.0 //
Probeset : 1638156_at
Accessions : protein= NP_477500;, nucleotide= NM_058152;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0005856 // cytoskeleton // inferred from electronic anno
FlyMine data for FBgn0001084.
BDGP gene expression has embryonic in situ data for fy: 8 pix of staining in 1 body parts.
BioGrid reports that CG13396 interacts with CG17697 CG17697 CG11084 CG11895 .
VDRC has 3 RNAi stocks for FBgn0001084 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain39 24 of 4 1.00None
Head28 24 of 4 0.70Down
Eye33 24 of 4 0.83None
Thoracicoabdominal ganglion29 14 of 4 0.70Down
Salivary gland44 34 of 4 1.10None
Crop33 24 of 4 0.80None
Midgut16 04 of 4 0.40Down
Tubule22 24 of 4 0.60Down
Hindgut23 34 of 4 0.60Down
Heart10 04 of 4 0.26Down
Fat body21 34 of 4 0.52Down
Ovary122 34 of 4 3.00Up
Testis23 14 of 4 0.60Down
Male accessory glands32 44 of 4 0.80None
Virgin spermatheca26 14 of 4 0.65Down
Mated spermatheca36 34 of 4 0.89None
Adult carcass23 24 of 4 0.60Down
Larval CNS58 24 of 4 1.45Up
Larval Salivary gland113 64 of 4 2.79Up
Larval midgut19 14 of 4 0.47Down
Larval tubule15 24 of 4 0.40Down
Larval hindgut29 14 of 4 0.72Down
Larval fat body22 14 of 4 0.50Down
Larval trachea58 84 of 4 1.44Up
Larval carcass38 04 of 4 0.95None
S2 cells (growing)39 34 of 4 0.98None
Whole fly40 34 of 4

Looking for CG13396-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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