Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13405-RA through 18771 annotations produced 1 hits


(CG13405):

Annotation Number : CG13405
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0035097
Gbrowse : chr3L:74473-75266 (-) // 99.5 //
Probeset : 1640314_at
Accessions : protein= NP_611999;, nucleotide= NM_138155;
FlyMine data for FBgn0035097.
BDGP gene expression has embryonic in situ data for CG13405: 2 pix of staining in 1 body parts.
BioGrid reports that CG13405 interacts with CG13679 CG1391 CG1665 CG17050 CG17603 CG1883 CG1886 CG3419 CG3998 CG17420 CG4303 CG4617 CG4621 CG4692 CG5271 CG5478 CG5502 CG6684 CG7386 CG7757 CG8569 CG8863 CG9306 CG7977 .
VDRC has 2 RNAi stocks for FBgn0035097 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.10Down
Head2 ± 10 of 4 0.00Down
Eye2 ± 10 of 4 0.06Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland5 ± 40 of 4 0.10Down
Crop4 ± 10 of 4 0.10Down
Midgut4 ± 10 of 4 0.10Down
Tubule2 ± 00 of 4 0.00Down
Hindgut2 ± 10 of 4 0.10Down
Heart1 ± 00 of 4 0.02Down
Fat body6 ± 10 of 4 0.11Down
Ovary2 ± 00 of 4 0.00Down
Testis710 ± 274 of 413.20Up
Male accessory glands6 ± 10 of 4 0.10Down
Virgin spermatheca3 ± 10 of 4 0.06Down
Mated spermatheca4 ± 10 of 4 0.09Down
Adult carcass8 ± 11 of 4 0.20Down
Larval CNS3 ± 11 of 4 0.06Down
Larval Salivary gland4 ± 10 of 4 0.07Down
Larval midgut2 ± 10 of 4 0.05Down
Larval tubule5 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.06Down
Larval fat body62 ± 334 of 4 1.20None
Larval trachea3 ± 21 of 4 0.06Down
Larval carcass1 ± 00 of 4 0.03Down
S2 cells (growing)3 ± 00 of 4 0.07Down
Whole fly54 ± 34 of 4

Looking for CG13405-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime