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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13417-RA through 18771 annotations produced 1 hits



Gustatory receptor 93a (Gr93a):

Annotation Number : CG13417
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0041229
Gbrowse : chr3R:17658224-17659735 (+) // 100.0 //
Probeset : 1635750_at
Accessions : protein= NP_524442;, nucleotide= NM_079718;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007165 // signal transduction // inferred from electronic ann
Interpro : 0005634 // nucleus // inferred from electronic annotation /// 0005886 // plasma membrane // inferred from electronic ann
FlyMine data for FBgn0041229.
VDRC has 3 RNAi stocks for FBgn0041229 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 7.40Up
Head4 ± 10 of 4 8.70Up
Eye1 ± 00 of 4 2.70None
Thoracicoabdominal ganglion3 ± 00 of 4 6.10None
Salivary gland7 ± 40 of 414.20None
Crop1 ± 00 of 4 2.40Up
Midgut3 ± 10 of 4 6.10None
Tubule2 ± 00 of 4 4.90Up
Hindgut1 ± 00 of 4 3.90None
Heart1 ± 00 of 4 3.35None
Fat body1 ± 10 of 4 3.45None
Ovary1 ± 00 of 4 2.10None
Testis1 ± 00 of 4 2.50None
Male accessory glands8 ± 11 of 417.60Up
Virgin spermatheca1 ± 00 of 4 3.00None
Mated spermatheca4 ± 00 of 4 8.30Up
Adult carcass3 ± 10 of 4 6.00None
Larval CNS2 ± 12 of 4 5.95None
Larval Salivary gland2 ± 00 of 4 5.10None
Larval midgut0 ± 00 of 4 1.75None
Larval tubule2 ± 00 of 4 4.50None
Larval hindgut1 ± 00 of 4 3.50None
Larval fat body4 ± 10 of 4 9.00None
Larval trachea1 ± 20 of 4 3.60None
Larval carcass1 ± 00 of 4 2.45None
S2 cells (growing)0 ± 00 of 4 0.75None
Whole fly0 ± 00 of 4

Looking for CG13417-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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