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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13419-RA through 18771 annotations produced 1 hits



bursicon (burs):

Annotation Number : CG13419
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0038901
Gbrowse : chr3R:17595272-17595916 (+) // 100.0 //
Probeset : 1628234_at
Accessions : protein= NP_650983;, nucleotide= NM_142726;
Pathway : 0005576 // extracellular region // inferred from direct assay /// 0005576 // extracellular region // inferred from elect
Interpro : 0005179 // hormone activity // inferred from mutant phenotype /// 0005179 // hormone activity // inferred from electroni
FlyMine data for FBgn0038901.
TRiP has 1 RNAi stocks for FBgn0038901 available for purchase.
VDRC has 2 RNAi stocks for FBgn0038901 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.40Down
Head1 00 of 4 0.20Down
Eye3 00 of 4 0.38Down
Thoracicoabdominal ganglion11 10 of 4 1.10None
Salivary gland18 30 of 4 1.85None
Crop2 10 of 4 0.30Down
Midgut113 104 of 411.60Up
Tubule28 14 of 4 2.90Up
Hindgut18 23 of 4 1.90Up
Heart1 00 of 4 0.18Down
Fat body5 20 of 4 0.54Down
Ovary3 10 of 4 0.40Down
Testis1 00 of 4 0.10Down
Male accessory glands8 20 of 4 0.90None
Virgin spermatheca5 10 of 4 0.54None
Mated spermatheca6 20 of 4 0.69None
Adult carcass8 30 of 4 0.90None
Larval CNS114 154 of 411.71Up
Larval Salivary gland8 20 of 4 0.84None
Larval midgut40 84 of 4 4.19Up
Larval tubule32 44 of 4 3.30Up
Larval hindgut19 23 of 4 1.97Up
Larval fat body4 10 of 4 0.40Down
Larval trachea2 20 of 4 0.23Down
Larval carcass9 10 of 4 0.98None
S2 cells (growing)2 10 of 4 0.29Down
Whole fly9 01 of 4

Looking for CG13419-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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