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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13422-RA through 18771 annotations produced 1 hits



/// (CG13422 /// CG7655):

Annotation Number : CG13422
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034511
Gbrowse : chr2R:16413831-16414331 (+) // 100.0 //
Probeset : 1627271_at
Accessions : protein= NP_611483;, nucleotide= NM_137639;
Pathway : 0005634 // nucleus // inferred from electronic annotation /// 0005635 // nuclear envelope // inferred from sequence or s
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034511.
VDRC has 2 RNAi stocks for FBgn0034511 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain14 34 of 4 0.10Down
Head582 824 of 4 3.40Up
Eye203 554 of 4 1.18None
Thoracicoabdominal ganglion17 54 of 4 0.10Down
Salivary gland11 30 of 4 0.07Down
Crop168 104 of 4 1.00None
Midgut4 10 of 4 0.00Down
Tubule45 173 of 4 0.30Down
Hindgut96 14 of 4 0.60Down
Heart816 774 of 4 4.75Up
Fat body1489 2484 of 4 8.66Up
Ovary2 00 of 4 0.00Down
Testis17 14 of 4 0.10Down
Male accessory glands6 00 of 4 0.00Down
Virgin spermatheca1505 1564 of 4 8.75Up
Mated spermatheca496 994 of 4 2.89Up
Adult carcass1212 1064 of 4 7.10Up
Larval CNS0 00 of 4 0.00Down
Larval Salivary gland1 00 of 4 0.01Down
Larval midgut6 11 of 4 0.04Down
Larval tubule3 00 of 4 0.00Down
Larval hindgut18 14 of 4 0.11Down
Larval fat body111 1012 of 4 0.60None
Larval trachea5 21 of 4 0.03Down
Larval carcass11 12 of 4 0.07Down
S2 cells (growing)0 00 of 4 0.00Down
Whole fly171 84 of 4

Looking for CG13422-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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