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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13423-RA through 18771 annotations produced 1 hits


Annotation Number : CG13423
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034513
Gbrowse : chr2R:16424082-16425762 (+) // 99.69 //
Probeset : 1623431_at
Accessions : protein= NP_611485;, nucleotide= NM_137641;
Interpro : 0004197 // cysteine-type endopeptidase activity // inferred from sequence or structural similarity /// 0004197 // cystei
FlyMine data for FBgn0034513.
Homophila reports that CG13423 is a close match (2e-66) to human gene BLMH;BMH (NP_000377), a gene associated with {Alzheimer disease, susceptibility to}, 104300 (3).
BioGrid reports that CG13423 interacts with CG13906 CG14270 CG1440 CG14711 CG15634 CG18619 CG2102 CG2261 CG2807 CG31324 CG3136 CG3510 CG3792 CG4303 CG4533 CG4717 CG5708 CG5792 CG7371 CG9426 CG9765 .
VDRC has 4 RNAi stocks for FBgn0034513 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.20Down
Head4 10 of 4 0.30Down
Eye3 21 of 4 0.29Down
Thoracicoabdominal ganglion6 00 of 4 0.50None
Salivary gland5 10 of 4 0.50None
Crop7 10 of 4 0.60None
Midgut1 00 of 4 0.20Down
Tubule3 00 of 4 0.30Down
Hindgut4 10 of 4 0.40None
Heart5 12 of 4 0.48None
Fat body7 40 of 4 0.62None
Ovary0 00 of 4 0.10Down
Testis144 64 of 412.50Up
Male accessory glands7 00 of 4 0.70None
Virgin spermatheca9 10 of 4 0.81None
Mated spermatheca12 10 of 4 1.11None
Adult carcass8 20 of 4 0.80None
Larval CNS6 22 of 4 0.54None
Larval Salivary gland5 22 of 4 0.48None
Larval midgut2 10 of 4 0.21Down
Larval tubule5 00 of 4 0.50None
Larval hindgut4 00 of 4 0.41None
Larval fat body31 113 of 4 2.80None
Larval trachea3 10 of 4 0.34Down
Larval carcass3 10 of 4 0.34Down
S2 cells (growing)4 00 of 4 0.35Down
Whole fly11 22 of 4

Looking for CG13423-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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