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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13436-RA through 18771 annotations produced 1 hits



(CG13436):

Annotation Number : CG13436
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034532
Gbrowse : chr2R:16523896-16525928 (+) // 100.0 //
Probeset : 1639620_at
Accessions : protein= NP_611498;, nucleotide= NM_137654;
FlyMine data for FBgn0034532.
BDGP gene expression has embryonic in situ data for CG13436: 4 pix of staining in 1 body parts.
BioGrid reports that CG13436 interacts with CG5450 .
VDRC has 3 RNAi stocks for FBgn0034532 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain18 ± 12 of 4 0.40Down
Head9 ± 10 of 4 0.20Down
Eye5 ± 20 of 4 0.13Down
Thoracicoabdominal ganglion16 ± 01 of 4 0.40Down
Salivary gland4 ± 00 of 4 0.09Down
Crop5 ± 20 of 4 0.10Down
Midgut10 ± 20 of 4 0.20Down
Tubule4 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart2 ± 10 of 4 0.06Down
Fat body7 ± 30 of 4 0.16Down
Ovary4 ± 10 of 4 0.10Down
Testis489 ± 284 of 411.00Up
Male accessory glands14 ± 10 of 4 0.30Down
Virgin spermatheca5 ± 10 of 4 0.13Down
Mated spermatheca5 ± 00 of 4 0.11Down
Adult carcass7 ± 20 of 4 0.20Down
Larval CNS13 ± 20 of 4 0.30Down
Larval Salivary gland9 ± 20 of 4 0.21Down
Larval midgut9 ± 20 of 4 0.21Down
Larval tubule8 ± 20 of 4 0.20Down
Larval hindgut8 ± 10 of 4 0.18Down
Larval fat body54 ± 212 of 4 1.20None
Larval trachea11 ± 20 of 4 0.27Down
Larval carcass10 ± 10 of 4 0.24Down
S2 cells (growing)6 ± 00 of 4 0.14Down
Whole fly44 ± 24 of 4

Looking for CG13436-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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