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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1347-RA through 18771 annotations produced 1 hits


Annotation Number : CG1347
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037363
Gbrowse : chr3R:1495434-1504523 (+) // 100.0 //
Probeset : 1640321_at
Accessions : protein= NP_649573; /// NP_996156;, nucleotide= NM_141316; /// NM_206434;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0037363.
Homophila reports that CG1347 is a close match (5e-67) to human gene RB1CC1;CC1;KIAA0203 (NP_001077086), a gene associated with Breast cancer, somatic, 114480 (3).
BioGrid reports that CG1347 interacts with CG3085 .
TRiP has 1 RNAi stocks for FBgn0037363 available for purchase.
VDRC has 2 RNAi stocks for FBgn0037363 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain49 24 of 4 1.30Up
Head36 64 of 4 1.00None
Eye71 24 of 4 1.91Up
Thoracicoabdominal ganglion34 44 of 4 0.90None
Salivary gland65 34 of 4 1.75Up
Crop51 14 of 4 1.40Up
Midgut33 24 of 4 0.90None
Tubule18 03 of 4 0.50Down
Hindgut33 14 of 4 0.90None
Heart74 84 of 4 1.98Up
Fat body52 124 of 4 1.38None
Ovary49 34 of 4 1.30None
Testis15 24 of 4 0.40Down
Male accessory glands28 34 of 4 0.80None
Virgin spermatheca8 02 of 4 0.23Down
Mated spermatheca11 14 of 4 0.30Down
Adult carcass53 64 of 4 1.40None
Larval CNS17 24 of 4 0.47Down
Larval Salivary gland22 24 of 4 0.60Down
Larval midgut30 24 of 4 0.81None
Larval tubule46 14 of 4 1.20None
Larval hindgut22 04 of 4 0.61Down
Larval fat body45 34 of 4 1.20None
Larval trachea20 54 of 4 0.56Down
Larval carcass20 34 of 4 0.55Down
S2 cells (growing)42 14 of 4 1.13None
Whole fly37 34 of 4

Looking for CG1347-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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