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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13475-RA through 18771 annotations produced 1 hits



HGTX (HGTX):

Annotation Number : CG13475
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040318
Gbrowse : chr3L:14576314-14592668 (-) // 100.0 //
Probeset : 1633530_at
Accessions : protein= NP_001137954; /// NP_652614;, nucleotide= NM_001144482; /// NM_144357;
Pathway : DNA-dependent // inferred from electronic annotation /// 0007399 // nervous system development // inferred from mutant
Interpro : 0005634 // nucleus // inferred from sequence or structural similarity /// 0005634 // nucleus // inferred from electronic
FlyMine data for FBgn0040318.
BDGP gene expression has embryonic in situ data for HGTX: 53 pix of staining in 22 body parts.
Homophila reports that CG13475 is a close match (5e-11) to human gene EMX2 (NP_004089), a gene associated with Schizencephaly, 269160 (3).
BioGrid reports that CG13475 interacts with CG3564 .
TRiP has 1 RNAi stocks for FBgn0040318 available for purchase.
VDRC has 2 RNAi stocks for FBgn0040318 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 03 of 4 2.50Up
Head1 ± 00 of 4 0.50None
Eye0 ± 00 of 4 0.20None
Thoracicoabdominal ganglion66 ± 34 of 419.70Up
Salivary gland9 ± 30 of 4 2.66None
Crop1 ± 10 of 4 0.50None
Midgut3 ± 11 of 4 1.10None
Tubule1 ± 00 of 4 0.40Down
Hindgut1 ± 00 of 4 0.50None
Heart2 ± 11 of 4 0.61None
Fat body3 ± 11 of 4 1.11None
Ovary0 ± 00 of 4 0.10None
Testis37 ± 24 of 411.20Up
Male accessory glands3 ± 20 of 4 1.10None
Virgin spermatheca2 ± 11 of 4 0.68None
Mated spermatheca3 ± 10 of 4 1.06None
Adult carcass1 ± 00 of 4 0.50None
Larval CNS52 ± 34 of 415.70Up
Larval Salivary gland2 ± 10 of 4 0.73None
Larval midgut1 ± 00 of 4 0.34None
Larval tubule1 ± 00 of 4 0.50None
Larval hindgut7 ± 20 of 4 2.15None
Larval fat body4 ± 10 of 4 1.30None
Larval trachea2 ± 30 of 4 0.87None
Larval carcass5 ± 21 of 4 1.67None
S2 cells (growing)1 ± 00 of 4 0.30None
Whole fly3 ± 10 of 4

Looking for CG13475-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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