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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13476-RA through 18771 annotations produced 1 hits



(CG13476):

Annotation Number : CG13476
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036441
Gbrowse : chr3L:14698581-14699256 (+) // 100.0 //
Probeset : 1627168_at
Accessions : protein= NP_729990; /// NP_996076;, nucleotide= NM_168594; /// NM_206354;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036441.
BioGrid reports that CG13476 interacts with CG14133 CG17564 CG17599 CG17744 CG30077 CG31136 CG6156 CG6856 CG8269 CG9418 CG9802 CG14025 CG14410 CG15071 CG18731 CG3894 CG40127 CG6444 CG6819 CG7831 CG8470 CG9246 CG31094 .
VDRC has 1 RNAi stocks for FBgn0036441 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head4 ± 21 of 4 0.00Down
Eye2 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion4 ± 10 of 4 0.00Down
Salivary gland8 ± 20 of 4 0.05Down
Crop8 ± 20 of 4 0.00Down
Midgut6 ± 10 of 4 0.00Down
Tubule7 ± 11 of 4 0.00Down
Hindgut8 ± 11 of 4 0.00Down
Heart3 ± 11 of 4 0.02Down
Fat body10 ± 20 of 4 0.06Down
Ovary2 ± 00 of 4 0.00Down
Testis1709 ± 414 of 4 9.60Up
Male accessory glands5 ± 20 of 4 0.00Down
Virgin spermatheca8 ± 11 of 4 0.05Down
Mated spermatheca7 ± 12 of 4 0.04Down
Adult carcass8 ± 10 of 4 0.00Down
Larval CNS3 ± 10 of 4 0.02Down
Larval Salivary gland9 ± 10 of 4 0.05Down
Larval midgut6 ± 10 of 4 0.04Down
Larval tubule9 ± 02 of 4 0.10Down
Larval hindgut5 ± 11 of 4 0.03Down
Larval fat body219 ± 1044 of 4 1.20None
Larval trachea15 ± 152 of 4 0.09Down
Larval carcass5 ± 10 of 4 0.03Down
S2 cells (growing)2 ± 00 of 4 0.01Down
Whole fly178 ± 124 of 4

Looking for CG13476-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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