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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13482-RA through 18771 annotations produced 1 hits



(CG13482):

Annotation Number : CG13482
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0036419
Gbrowse : chr3L:14322536-14322845 (+) // 100.0 //
Probeset : 1636798_at
Accessions : protein= NP_648700;, nucleotide= NM_140443;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0036419.
BioGrid reports that CG13482 interacts with CG31721 .
VDRC has 1 RNAi stocks for FBgn0036419 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 00 of 4 0.00Down
Head8 20 of 4 0.00Down
Eye5 21 of 4 0.01Down
Thoracicoabdominal ganglion11 21 of 4 0.00Down
Salivary gland23 31 of 4 0.04Down
Crop20 33 of 4 0.00Down
Midgut4803 994 of 4 7.20Up
Tubule381 1094 of 4 0.60Down
Hindgut813 374 of 4 1.20None
Heart372 1684 of 4 0.56None
Fat body33 311 of 4 0.05Down
Ovary5 00 of 4 0.00Down
Testis16 20 of 4 0.00Down
Male accessory glands9 30 of 4 0.00Down
Virgin spermatheca14 20 of 4 0.02Down
Mated spermatheca18 10 of 4 0.03Down
Adult carcass21 10 of 4 0.00Down
Larval CNS11 13 of 4 0.02Down
Larval Salivary gland10 20 of 4 0.02Down
Larval midgut3267 2934 of 4 4.90Up
Larval tubule385 1124 of 4 0.60None
Larval hindgut1717 1544 of 4 2.57Up
Larval fat body5 20 of 4 0.00Down
Larval trachea26 182 of 4 0.04Down
Larval carcass17 10 of 4 0.03Down
S2 cells (growing)5 10 of 4 0.01Down
Whole fly667 964 of 4

Looking for CG13482-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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