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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1349-RA through 18771 annotations produced 1 hits

dj-1beta (dj-1beta):

Annotation Number : CG1349
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039802
Gbrowse : chr3R:26632847-26633701 (+) // 100.0 //
Probeset : 1640318_at
Accessions : protein= NP_651825;, nucleotide= NM_143568;
FlyMine data for FBgn0039802.
BDGP gene expression has embryonic in situ data for dj-1beta: 4 pix of staining in 1 body parts.
Homophila reports that CG1349 is a close match (1e-42) to human gene DJ1;PARK7 (NP_009193), a gene associated with Amyotrophic lateral sclerosis-Parkinsonism/dementia complex 2 (3);Parkinson disease 7, autosomal recessive early-onset, 606324 (3).
TRiP has 3 RNAi stocks for FBgn0039802 available for purchase.
VDRC has 3 RNAi stocks for FBgn0039802 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain197 104 of 4 1.30Up
Head165 294 of 4 1.10None
Eye171 164 of 4 1.15None
Thoracicoabdominal ganglion224 84 of 4 1.50Up
Salivary gland148 114 of 4 0.99None
Crop171 74 of 4 1.20None
Midgut140 54 of 4 0.90None
Tubule234 64 of 4 1.60Up
Hindgut211 114 of 4 1.40Up
Heart174 114 of 4 1.17None
Fat body141 14 of 4 0.95None
Ovary134 84 of 4 0.90None
Testis73 44 of 4 0.50Down
Male accessory glands119 164 of 4 0.80None
Virgin spermatheca123 64 of 4 0.83None
Mated spermatheca116 164 of 4 0.78None
Adult carcass339 174 of 4 2.30Up
Larval CNS198 464 of 4 1.33None
Larval Salivary gland128 64 of 4 0.86None
Larval midgut62 54 of 4 0.42Down
Larval tubule160 74 of 4 1.10None
Larval hindgut70 34 of 4 0.47Down
Larval fat body115 204 of 4 0.80None
Larval trachea135 54 of 4 0.91None
Larval carcass198 194 of 4 1.33None
S2 cells (growing)397 44 of 4 2.67Up
Whole fly149 104 of 4

Looking for CG1349-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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