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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13499-RB through 18771 annotations produced 2 hits



CG13499 (CG34370):

Annotation Number : CG13499
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085399
Gbrowse : chr2R:17892409-17927063 (-) // 100.0 //
Probeset : 1626254_s_at
Accessions : protein= NP_001097404;, nucleotide= NM_001103934;
FlyMine data for FBgn0085399.
TRiP has 1 RNAi stocks for FBgn0085399 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085399 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain29 34 of 428.70Up
Head4 10 of 4 3.90None
Eye1 00 of 4 1.66None
Thoracicoabdominal ganglion14 20 of 414.60Up
Salivary gland7 10 of 4 7.07Up
Crop1 00 of 4 1.70None
Midgut0 00 of 4 0.90None
Tubule3 00 of 4 3.20Up
Hindgut1 00 of 4 1.20None
Heart3 10 of 4 3.49None
Fat body1 00 of 4 1.85Up
Ovary0 00 of 4 0.90None
Testis0 00 of 4 0.80None
Male accessory glands4 20 of 4 4.20None
Virgin spermatheca2 00 of 4 2.63None
Mated spermatheca2 00 of 4 2.54None
Adult carcass6 20 of 4 6.60None
Larval CNS1 10 of 4 1.88None
Larval Salivary gland3 00 of 4 2.88None
Larval midgut5 20 of 4 5.59None
Larval tubule2 10 of 4 2.80None
Larval hindgut1 00 of 4 1.10None
Larval fat body4 20 of 4 4.10None
Larval trachea1 00 of 4 1.56None
Larval carcass3 10 of 4 3.34None
S2 cells (growing)1 00 of 4 1.41None
Whole fly1 00 of 4



CG13499 (CG34370):

Annotation Number : CG13499
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085399
Gbrowse : chr2R:17892409-17927063 (-) // 100.0 //
Probeset : 1627543_at
Accessions : protein= NP_001097404;, nucleotide= NM_001103934;
FlyMine data for FBgn0085399.
TRiP has 1 RNAi stocks for FBgn0085399 available for purchase.
VDRC has 5 RNAi stocks for FBgn0085399 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.80None
Head0 00 of 4 0.30None
Eye2 10 of 4 0.90None
Thoracicoabdominal ganglion0 00 of 4 0.30None
Salivary gland8 40 of 4 3.17None
Crop3 10 of 4 1.10None
Midgut1 00 of 4 0.60None
Tubule2 00 of 4 0.80Down
Hindgut0 00 of 4 0.30None
Heart1 00 of 4 0.64None
Fat body1 10 of 4 0.58None
Ovary1 00 of 4 0.40None
Testis1 00 of 4 0.60None
Male accessory glands2 00 of 4 0.90None
Virgin spermatheca3 10 of 4 1.21None
Mated spermatheca1 00 of 4 0.49None
Adult carcass3 00 of 4 1.20None
Larval CNS0 00 of 4 0.23None
Larval Salivary gland3 20 of 4 1.46None
Larval midgut2 10 of 4 1.03None
Larval tubule0 00 of 4 0.30None
Larval hindgut1 00 of 4 0.71None
Larval fat body0 00 of 4 0.30None
Larval trachea1 30 of 4 0.73None
Larval carcass2 00 of 4 0.91None
S2 cells (growing)2 00 of 4 0.80None
Whole fly2 10 of 4

Looking for CG13499-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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