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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13502-RB through 18771 annotations produced 1 hits



(CG13502):

Annotation Number : CG13502
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034692
Gbrowse : chr2R:17973173-17975136 (-) // 100.0 //
Probeset : 1625040_a_at
Accessions : protein= NP_001097405; /// NP_611637;, nucleotide= NM_001103935; /// NM_137793;
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0034692.
BDGP gene expression has embryonic in situ data for CG13502: 4 pix of staining in 1 body parts.
BioGrid reports that CG13502 interacts with CG17957 CG1911 CG32706 CG15812 CG5155 CG5277 .
VDRC has 3 RNAi stocks for FBgn0034692 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain16 ± 14 of 4 1.80Up
Head12 ± 33 of 4 1.40None
Eye9 ± 14 of 4 1.05None
Thoracicoabdominal ganglion23 ± 14 of 4 2.60Up
Salivary gland12 ± 10 of 4 1.36None
Crop16 ± 14 of 4 1.80Up
Midgut14 ± 24 of 4 1.60None
Tubule11 ± 02 of 4 1.30Up
Hindgut13 ± 14 of 4 1.50None
Heart9 ± 12 of 4 1.10None
Fat body18 ± 44 of 4 2.03Up
Ovary12 ± 14 of 4 1.40Up
Testis9 ± 13 of 4 1.00None
Male accessory glands21 ± 14 of 4 2.40Up
Virgin spermatheca11 ± 11 of 4 1.25None
Mated spermatheca9 ± 11 of 4 1.09None
Adult carcass19 ± 24 of 4 2.20Up
Larval CNS17 ± 24 of 4 1.92Up
Larval Salivary gland13 ± 21 of 4 1.47None
Larval midgut16 ± 22 of 4 1.89Up
Larval tubule14 ± 14 of 4 1.60None
Larval hindgut14 ± 24 of 4 1.59None
Larval fat body12 ± 12 of 4 1.40None
Larval trachea9 ± 23 of 4 1.02None
Larval carcass18 ± 13 of 4 2.11Up
S2 cells (growing)11 ± 14 of 4 1.27None
Whole fly8 ± 13 of 4

Looking for CG13502-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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