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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13503-RB through 18771 annotations produced 1 hits



solitary (Vrp1):

Annotation Number : CG13503
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0243516
Gbrowse : chr2R:17995085-18010053 (-) // 100.0 //
Probeset : 1634562_s_at
Accessions : protein= NP_001097406; /// NP_001163246; /// NP_001163247; /// NP_001163248; /// NP_001163249; /// NP_611640; /// NP_726159; /// NP_726160; /// NP_726161; /// NP_726162; /// NP_726163;, nucleotide= NM_001103936; /// NM_001169775; /// NM_001169776; /// NM_001169777; /// NM_001169778; /// NM_137796; /// NM_166507; /// NM_166508; /// NM_166509; /// NM_166510; /// NM_166511;
Pathway : 0005737 // cytoplasm // inferred from direct assay /// 0032433 // filopodium tip // inferred from direct assay
Interpro : 0051015 // actin filament binding // inferred from direct assay
FlyMine data for FBgn0243516.
BioGrid reports that CG13503 interacts with CG1520 CG3727 CG4700 CG5565 .
TRiP has 2 RNAi stocks for FBgn0243516 available for purchase.
VDRC has 2 RNAi stocks for FBgn0243516 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 44 of 4 0.80Down
Head138 64 of 4 1.00None
Eye275 334 of 4 1.90Up
Thoracicoabdominal ganglion164 84 of 4 1.10None
Salivary gland314 164 of 4 2.17Up
Crop378 124 of 4 2.60Up
Midgut188 64 of 4 1.30Up
Tubule91 64 of 4 0.60Down
Hindgut222 54 of 4 1.50Up
Heart229 194 of 4 1.59Up
Fat body225 434 of 4 1.56Up
Ovary363 94 of 4 2.50Up
Testis68 14 of 4 0.50Down
Male accessory glands135 74 of 4 0.90None
Virgin spermatheca169 84 of 4 1.17None
Mated spermatheca164 174 of 4 1.13None
Adult carcass182 84 of 4 1.30Up
Larval CNS124 64 of 4 0.86Down
Larval Salivary gland268 204 of 4 1.85Up
Larval midgut315 504 of 4 2.18Up
Larval tubule325 204 of 4 2.30Up
Larval hindgut353 134 of 4 2.44Up
Larval fat body230 184 of 4 1.60Up
Larval trachea699 1604 of 4 4.83Up
Larval carcass347 274 of 4 2.40Up
S2 cells (growing)786 764 of 4 5.43Up
Whole fly144 54 of 4

Looking for CG13503-RB. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime