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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13504-RA through 18771 annotations produced 1 hits



(CG34205):

Annotation Number : CG13504
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085234
Gbrowse : chr2R:18017833-18018473 (-) // 100.0 //
Probeset : 1628171_at
Accessions : protein= NP_001097407;, nucleotide= NM_001103937;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0085234.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 ± 10 of 4 0.70None
Head8 ± 30 of 4 0.60None
Eye7 ± 30 of 4 0.61None
Thoracicoabdominal ganglion12 ± 10 of 4 1.00None
Salivary gland10 ± 40 of 4 0.78None
Crop5 ± 20 of 4 0.40None
Midgut24 ± 10 of 4 1.90None
Tubule8 ± 10 of 4 0.70Down
Hindgut15 ± 20 of 4 1.20None
Heart8 ± 10 of 4 0.66None
Fat body9 ± 40 of 4 0.76None
Ovary6 ± 00 of 4 0.50None
Testis6 ± 00 of 4 0.50None
Male accessory glands25 ± 30 of 4 1.90None
Virgin spermatheca11 ± 20 of 4 0.89None
Mated spermatheca9 ± 20 of 4 0.69None
Adult carcass15 ± 30 of 4 1.20None
Larval CNS9 ± 30 of 4 0.76None
Larval Salivary gland18 ± 20 of 4 1.46None
Larval midgut21 ± 51 of 4 1.66None
Larval tubule22 ± 50 of 4 1.70None
Larval hindgut11 ± 20 of 4 0.88None
Larval fat body16 ± 10 of 4 1.30None
Larval trachea11 ± 40 of 4 0.91None
Larval carcass28 ± 43 of 4 2.17Up
S2 cells (growing)10 ± 20 of 4 0.78None
Whole fly13 ± 41 of 4

Looking for CG13504-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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