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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13526-RA through 18771 annotations produced 1 hits


(CG13526):

Annotation Number : CG13526
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034774
Gbrowse : chr2R:18642744-18643401 (+) // 100.0 //
Probeset : 1624508_at
Accessions : protein= NP_611714;, nucleotide= NM_137870;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0034774.
Homophila reports that CG13526 is a close match (2e-17) to human gene CABP4;CSNB2B (NP_660201), a gene associated with Night blindness, congenital stationary, type 2B, 610427 (3).
BioGrid reports that CG13526 interacts with CG14639 CG14671 CG15631 CG1877 CG40006 CG4303 CG4455 CG4922 CG5170 CG5441 CG5468 CG5803 CG5887 CG7123 CG7386 CG7570 CG7856 CG9415 CG33197 CG6447 CG6478 CG33304 CG33274 .
VDRC has 3 RNAi stocks for FBgn0034774 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 ± 01 of 4 0.20Down
Head6 ± 10 of 4 0.10Down
Eye3 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion6 ± 20 of 4 0.10Down
Salivary gland10 ± 20 of 4 0.20Down
Crop6 ± 20 of 4 0.10Down
Midgut2 ± 00 of 4 0.00Down
Tubule5 ± 00 of 4 0.10Down
Hindgut4 ± 10 of 4 0.10Down
Heart3 ± 10 of 4 0.07Down
Fat body9 ± 50 of 4 0.18Down
Ovary0 ± 00 of 4 0.00Down
Testis513 ± 234 of 410.20Up
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca5 ± 10 of 4 0.11Down
Mated spermatheca9 ± 40 of 4 0.19Down
Adult carcass5 ± 10 of 4 0.10Down
Larval CNS2 ± 20 of 4 0.06Down
Larval Salivary gland4 ± 10 of 4 0.09Down
Larval midgut4 ± 10 of 4 0.08Down
Larval tubule4 ± 10 of 4 0.10Down
Larval hindgut5 ± 00 of 4 0.11Down
Larval fat body34 ± 152 of 4 0.70None
Larval trachea4 ± 30 of 4 0.08Down
Larval carcass3 ± 00 of 4 0.07Down
S2 cells (growing)3 ± 00 of 4 0.08Down
Whole fly50 ± 34 of 4

Looking for CG13526-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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