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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13532-RA through 18771 annotations produced 1 hits



(CG13532):

Annotation Number : CG13532
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034788
Gbrowse : chr2R:18758814-18761956 (+) // 100.0 //
Probeset : 1633162_at
Accessions : protein= NP_611728;, nucleotide= NM_137884;
FlyMine data for FBgn0034788.
BDGP gene expression has embryonic in situ data for CG13532: 17 pix of staining in 7 body parts.
TRiP has 1 RNAi stocks for FBgn0034788 available for purchase.
VDRC has 2 RNAi stocks for FBgn0034788 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain222 ± 24 of 436.20Up
Head66 ± 54 of 410.80Up
Eye71 ± 154 of 411.67Up
Thoracicoabdominal ganglion198 ± 54 of 432.30Up
Salivary gland14 ± 52 of 4 2.27None
Crop5 ± 00 of 4 1.00None
Midgut3 ± 10 of 4 0.60None
Tubule4 ± 00 of 4 0.70Down
Hindgut4 ± 00 of 4 0.70Down
Heart3 ± 10 of 4 0.59None
Fat body10 ± 42 of 4 1.66None
Ovary0 ± 00 of 4 0.10Down
Testis4 ± 00 of 4 0.70Down
Male accessory glands10 ± 31 of 4 1.70None
Virgin spermatheca7 ± 10 of 4 1.15None
Mated spermatheca9 ± 22 of 4 1.60None
Adult carcass2 ± 10 of 4 0.40Down
Larval CNS236 ± 154 of 438.50Up
Larval Salivary gland7 ± 11 of 4 1.14None
Larval midgut5 ± 10 of 4 0.89None
Larval tubule2 ± 00 of 4 0.40Down
Larval hindgut2 ± 00 of 4 0.35Down
Larval fat body4 ± 20 of 4 0.60None
Larval trachea5 ± 31 of 4 0.88None
Larval carcass8 ± 10 of 4 1.38None
S2 cells (growing)3 ± 10 of 4 0.62None
Whole fly6 ± 01 of 4

Looking for CG13532-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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