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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG13533-RA through 18771 annotations produced 1 hits

asrij (asrij):

Annotation Number : CG13533
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034793
Gbrowse : chr2R:18773920-18775101 (+) // 99.63 //
Probeset : 1629039_at
Accessions : protein= NP_611733;, nucleotide= NM_137889;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0034793.
BDGP gene expression has embryonic in situ data for CG13533: 2 pix of staining in 1 body parts.
BioGrid reports that CG13533 interacts with CG14186 CG6293 CG8385 CG8204 .
VDRC has 2 RNAi stocks for FBgn0034793 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain153 34 of 4 1.00None
Head108 64 of 4 0.70None
Eye160 54 of 4 1.06None
Thoracicoabdominal ganglion172 94 of 4 1.10None
Salivary gland136 74 of 4 0.91None
Crop124 34 of 4 0.80None
Midgut95 54 of 4 0.60Down
Tubule172 74 of 4 1.10Up
Hindgut144 34 of 4 1.00None
Heart149 104 of 4 0.99None
Fat body109 14 of 4 0.72None
Ovary192 64 of 4 1.30None
Testis171 54 of 4 1.10None
Male accessory glands179 114 of 4 1.20None
Virgin spermatheca98 84 of 4 0.65Down
Mated spermatheca89 54 of 4 0.59Down
Adult carcass118 54 of 4 0.80None
Larval CNS174 74 of 4 1.15None
Larval Salivary gland174 94 of 4 1.16None
Larval midgut80 24 of 4 0.53Down
Larval tubule131 84 of 4 0.90None
Larval hindgut185 104 of 4 1.23None
Larval fat body121 34 of 4 0.80None
Larval trachea203 94 of 4 1.34None
Larval carcass131 34 of 4 0.87None
S2 cells (growing)228 44 of 4 1.51Up
Whole fly151 174 of 4

Looking for CG13533-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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