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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13550-RA through 18771 annotations produced 1 hits



(CG13550):

Annotation Number : CG13550
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034853
Gbrowse : chr2R:19254411-19258984 (+) // 100.0 //
Probeset : 1631109_at
Accessions : protein= NP_611786;, nucleotide= NM_137942;
FlyMine data for FBgn0034853.
BDGP gene expression has embryonic in situ data for CG13550: 4 pix of staining in 1 body parts.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain37 ± 24 of 4 0.40Down
Head18 ± 31 of 4 0.20Down
Eye23 ± 24 of 4 0.26Down
Thoracicoabdominal ganglion31 ± 34 of 4 0.40Down
Salivary gland27 ± 40 of 4 0.31Down
Crop32 ± 30 of 4 0.40Down
Midgut16 ± 10 of 4 0.20Down
Tubule30 ± 20 of 4 0.30Down
Hindgut26 ± 20 of 4 0.30Down
Heart18 ± 23 of 4 0.21Down
Fat body32 ± 20 of 4 0.36Down
Ovary249 ± 64 of 4 2.80Up
Testis33 ± 24 of 4 0.40Down
Male accessory glands23 ± 40 of 4 0.30Down
Virgin spermatheca27 ± 12 of 4 0.31Down
Mated spermatheca26 ± 31 of 4 0.30Down
Adult carcass27 ± 20 of 4 0.30Down
Larval CNS100 ± 44 of 4 1.13None
Larval Salivary gland71 ± 20 of 4 0.80None
Larval midgut29 ± 20 of 4 0.32Down
Larval tubule18 ± 00 of 4 0.20Down
Larval hindgut49 ± 14 of 4 0.55Down
Larval fat body24 ± 30 of 4 0.30Down
Larval trachea62 ± 54 of 4 0.70Down
Larval carcass53 ± 43 of 4 0.60Down
S2 cells (growing)51 ± 34 of 4 0.58Down
Whole fly89 ± 83 of 4

Looking for CG13550-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime