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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13561-RA through 18771 annotations produced 1 hits



(CG13561):

Annotation Number : CG13561
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034906
Gbrowse : chr2R:19691837-19692219 (-) // 100.0 //
Probeset : 1625667_at
Accessions : protein= NP_611830;, nucleotide= NM_137986;
FlyMine data for FBgn0034906.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.50None
Head8 ± 00 of 4 1.40None
Eye1 ± 00 of 4 0.34None
Thoracicoabdominal ganglion2 ± 00 of 4 0.40None
Salivary gland8 ± 20 of 4 1.48None
Crop9 ± 22 of 4 1.70None
Midgut13 ± 33 of 4 2.40None
Tubule9 ± 01 of 4 1.60Up
Hindgut9 ± 22 of 4 1.70None
Heart3 ± 00 of 4 0.56None
Fat body12 ± 40 of 4 2.18Up
Ovary1 ± 01 of 4 0.30None
Testis5 ± 10 of 4 1.00None
Male accessory glands8 ± 10 of 4 1.50None
Virgin spermatheca7 ± 11 of 4 1.28None
Mated spermatheca6 ± 10 of 4 1.21None
Adult carcass8 ± 20 of 4 1.50None
Larval CNS4 ± 22 of 4 0.74None
Larval Salivary gland1 ± 00 of 4 0.28None
Larval midgut7 ± 20 of 4 1.24None
Larval tubule6 ± 10 of 4 1.20None
Larval hindgut6 ± 23 of 4 1.08None
Larval fat body9 ± 30 of 4 1.60None
Larval trachea2 ± 10 of 4 0.42None
Larval carcass9 ± 11 of 4 1.65None
S2 cells (growing)4 ± 10 of 4 0.74None
Whole fly5 ± 10 of 4

Looking for CG13561-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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