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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13565-RA through 18771 annotations produced 1 hits



(CG13565):

Annotation Number : CG13565
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034935
Gbrowse : chr2R:19834481-19836137 (-) // 100.0 //
Probeset : 1628567_at
Accessions : protein= NP_611852;, nucleotide= NM_138008;
FlyMine data for FBgn0034935.
BDGP gene expression has embryonic in situ data for CG13565: 16 pix of staining in 3 body parts.
BioGrid reports that CG13565 interacts with CG5692 .
VDRC has 2 RNAi stocks for FBgn0034935 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1297 ± 444 of 415.10Up
Head449 ± 234 of 4 5.20Up
Eye45 ± 224 of 4 0.53None
Thoracicoabdominal ganglion2404 ± 1084 of 428.00Up
Salivary gland7 ± 20 of 4 0.09Down
Crop4 ± 00 of 4 0.10Down
Midgut36 ± 34 of 4 0.40Down
Tubule29 ± 20 of 4 0.30Down
Hindgut10 ± 20 of 4 0.10Down
Heart7 ± 20 of 4 0.09Down
Fat body4 ± 40 of 4 0.05Down
Ovary2 ± 00 of 4 0.00Down
Testis8 ± 00 of 4 0.10Down
Male accessory glands2 ± 10 of 4 0.00Down
Virgin spermatheca2 ± 10 of 4 0.03Down
Mated spermatheca5 ± 10 of 4 0.07Down
Adult carcass41 ± 122 of 4 0.50Down
Larval CNS462 ± 1054 of 4 5.38Up
Larval Salivary gland4 ± 20 of 4 0.05Down
Larval midgut13 ± 04 of 4 0.16Down
Larval tubule44 ± 12 of 4 0.50Down
Larval hindgut7 ± 10 of 4 0.09Down
Larval fat body6 ± 10 of 4 0.10Down
Larval trachea3 ± 41 of 4 0.05Down
Larval carcass9 ± 20 of 4 0.11Down
S2 cells (growing)15 ± 23 of 4 0.18Down
Whole fly86 ± 24 of 4

Looking for CG13565-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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