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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG1358-RA through 18771 annotations produced 1 hits


Annotation Number : CG1358
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033196
Gbrowse : chr2R:3482769-3502040 (-) // 100.0 //
Probeset : 1623777_s_at
Accessions : protein= NP_610301; /// NP_724584; /// NP_724585;, nucleotide= NM_136457; /// NM_165545; /// NM_165546;
FlyMine data for FBgn0033196.
VDRC has 2 RNAi stocks for FBgn0033196 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1114 144 of 421.50Up
Head388 254 of 4 7.50Up
Eye488 294 of 4 9.41Up
Thoracicoabdominal ganglion1166 564 of 422.50Up
Salivary gland13 81 of 4 0.26Down
Crop4 10 of 4 0.10Down
Midgut39 04 of 4 0.80None
Tubule17 52 of 4 0.30Down
Hindgut48 24 of 4 0.90None
Heart32 04 of 4 0.62None
Fat body53 74 of 4 1.03None
Ovary31 14 of 4 0.60None
Testis23 14 of 4 0.50Down
Male accessory glands554 164 of 410.70Up
Virgin spermatheca78 134 of 4 1.51None
Mated spermatheca35 104 of 4 0.68None
Adult carcass21 32 of 4 0.40Down
Larval CNS197 264 of 4 3.81Up
Larval Salivary gland19 11 of 4 0.38Down
Larval midgut49 74 of 4 0.96None
Larval tubule27 34 of 4 0.50Down
Larval hindgut43 24 of 4 0.85None
Larval fat body17 00 of 4 0.30Down
Larval trachea5 61 of 4 0.10Down
Larval carcass3 10 of 4 0.07Down
S2 cells (growing)453 34 of 4 8.74Up
Whole fly51 74 of 4

Looking for CG1358-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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