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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG13582-RA through 18771 annotations produced 1 hits



CG42291 (Ir60d):

Annotation Number : CG13582
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259187
Gbrowse : chr2R:20403247-20408670 (+) // 100.0 //
Probeset : 1625039_at
Accessions : protein= NP_001137757;, nucleotide= NM_001144285;
FlyMine data for FBgn0259187.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.50Down
Head1 ± 00 of 4 1.30None
Eye1 ± 00 of 4 1.02None
Thoracicoabdominal ganglion2 ± 10 of 4 2.70None
Salivary gland6 ± 30 of 4 6.48None
Crop1 ± 00 of 4 1.20None
Midgut3 ± 10 of 4 3.50None
Tubule1 ± 00 of 4 1.10None
Hindgut1 ± 00 of 4 1.50None
Heart0 ± 00 of 4 0.45Down
Fat body2 ± 10 of 4 1.95None
Ovary1 ± 00 of 4 1.20None
Testis2 ± 00 of 4 2.10None
Male accessory glands2 ± 00 of 4 2.80Up
Virgin spermatheca2 ± 10 of 4 2.36None
Mated spermatheca2 ± 10 of 4 2.12None
Adult carcass5 ± 20 of 4 5.10None
Larval CNS0 ± 00 of 4 0.74None
Larval Salivary gland6 ± 10 of 4 5.83Up
Larval midgut2 ± 10 of 4 2.69None
Larval tubule1 ± 00 of 4 1.30None
Larval hindgut2 ± 00 of 4 2.10None
Larval fat body2 ± 10 of 4 2.30None
Larval trachea2 ± 00 of 4 2.12Up
Larval carcass2 ± 00 of 4 1.95None
S2 cells (growing)2 ± 00 of 4 2.29None
Whole fly1 ± 00 of 4

Looking for CG13582-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime